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chip-seq visualize tool IGV

Hello,

I tried to use IGV to visualize my chip-seq peak file.

Why it is so strange? The peak is not smooth?

Thanks in advance for any help!

Best,

Yue

https://ibb.co/Chh2dZY

chip-seq
• 2,576 views • link
written by yueli7 yueli7

While embedding an image just copy the image address and use the Image option in the editor, also use the same scale in all the IGV tracks. The 2nd track seems to contain lots of noise may be caused by nonspecific binding of the antibody or sequencing instrument. Rather than visually exploring go for peak calling and use the peak file as a reference for IGV.

• 0 views • link
written by Arup Ghosh Arup Ghosh

The link itself is broken, please fix.

• 0 views • link
written by ATpoint ATpoint

Hello, ATpoint,

I still can see it.

Thank you for your remainding.

Best,

yue

• 0 views • link
written by yueli7 yueli7

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