Copying selective fastq files from a dir to another
Hi I have a directory from were I want to copy selective fastq files. This dir has multiple fastq files which i dont want. Please can someone help in providing the code to do it quick
Here is an example of what I want to capture- the only changing words are "P01_WF10"
RAPiD-Genomics_HL5NLBBXX_PFR_100901_P01_WF10_i5-502_i7-166_S589_L004_R2_001.fastq.gz
RAPiD-Genomics_HL5NLBBXX_PFR_100901_P01_WF11_i5-502_i7-167_S590_L004_R1_001.fastq.gz
• 1,970 views
•
link
written
by
jibran.tahir •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Fastq with more reads than fast5 files
written by Anna •
-
bwa-mem keeps failing to locate the index files
written by pairedttest •
-
trimming fastq files
written by gina02 •
-
Server denied on SRA download
written by vitor •
-
Have a question about run jellyfish in many directories with different number of zipped fasta files
written by schlogl
-
How to cat 2 paired end reads files together in one file using loops for multiple libraries ?
written by v.berriosfarias •
-
STAR multiple FASTQ alignment, can you use with a variable $?
written by science_lizard •
-
How to cat fastq files but keep different samples separate
written by m.radz •
-
Problem with read counts after concatenating FASTQ files
written by Akshaya •
-
Using hg38 assembly with hg19 exome capture data
written by jdm204 •
I think this will do:
Perhaps you can also provide the example files that you don't want.
Great, it worked very well- just added bsub to the start to put the job on back end, cheers