Hello,
I am new to proteomics and am seeking some help from experienced users. I have a mass-spec data as a comaprison file between control and treatment. I have the log10 average intensity values, log2 ratio control/treatment , fold change values and E-values. These are non-normalised. I would like to know the process and ways to process this data for gene-enrichment analysis and for finding significantly expressed genes. Below is some data for reference. Appreciate the help.
Thankyou
Description log10 Average Intensity log 2 Ratio mEERL parental/MOC7 Fold Change mEERL parental/MOC7 best E-value Apolipoprotein E 9.739351739 0.611309822 1.527645528 -7.21131 Apolipoprotein E 9.739351739 0.611309822 1.527645528 -7.21131 Apolipoprotein E 9.359411743 -9.249078522 -608.4852669 -7.21131
0 answers
No answers yet.
Log in to answer this question.
-
fold enrichment between genomic regions/loci
written by Matteo Ungaro •
-
How to extract DEGs from GEO database
written by harrydo1892 •
-
DESeq2: adjusted p-values become NA when sub-setting samples
written by txema.heredia •
-
Tutorial: Bulk RNA-seq: Different Expression Analysis with DEseq2
written by Julia Ma •
-
Tutorial: GEO Data Mining (II) - Differential gene expression analysis and visualization with compl…
written by Novogene •
-
delta delta Ct method for paired samples and 2 factorial design?
written by bhakti.dwivedi •
-
Tutorial: Basic normalization, batch correction and visualization of RNA-seq data
written by ATpoint
-
Clustering differentially expressed genes in response to multiple treatments (using edgeR)
written by eggrandio •
-
Job: Bioinformatics Research Consultant needed for constructing TFBS and regulatory networks from t…
written by tfhahn •
-
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
written by TriS
