Bedtools shift in a defined chromosomal position
Hi All!
Do you know if there is a way to use bedtools shift tool in a defined chromosomal postions. In other words, shift +10 bp only the regions that are on chr1 in beteween 1 and 10000.
E.g:
chr1 10 100
chr1 20000 21000
bedtools shift -s 10 -chr_reg chr1:1-10000
chr1 20 110
chr1 20000 21000
Thanks!
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Pierre Lindenbaum
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ste.lu
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ste.lu
1 answer
extract the regions that are not in " chr1:1-10000"
run bedtools in chr1:1-10000
concatenate both files.
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Pierre Lindenbaum
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