This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Viewing alignment from SAM/MAF/PSL files

Hi!

I have an alignment file in different formats namely, SAM, MAF, PSL. These files contains data in the form of contigs mapping start and end position on chromosome, the chromosome number and score.

Is there any tool for the easy visualization of this data, as in, contigs overlapping with the reference genome?

Thanks

genome alignment assembly
• 1,679 views • link
updated by h.mon h.mon • written by SpamChop • SpamChop

1 answer

IGV and other genome browsers are able to display these files.

• 0 views • link
written by h.mon h.mon

Log in to answer this question.

More posts like this