How to use multiple control in Control-FREEC for CNV analysis?
We have 15 control sample and 30 test sample and want to check copy number variation in test samples. The sequencing method used is ion-torrent PGM,
A region in a chromosome is targeted and the whole region is sequenced including intron and intergenic region.
Which tool is best to identify CNV in the samples?
Control-FREEC is one of the methods we found useful but the control sample are not matched normal, can we use multiple control in FREEC?
• 1,620 views
•
link
written
by
BioNoobie •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to call CNV without normal samples
written by SkyL •
-
Panel of tumors for CNV detection
written by biobiu
-
How to evaluate "control" genes in target sequencing data?
written by jinxinhao1988
-
how to create target region track for CNV detection using Biomedical genomics workbench
written by reza
-
ASCAT CNV from PGM Ion Torrent Exome data
written by prideda0 •
-
Can I merge the exome interval lists from two different kits for identifying CNVs using XHMM?
written by bioinforesearchquestions
-
CNV software for Ion Torrent data
written by quantrum75 •
-
Removal of Prevotella Copri sequence from a FASTQ/A file
written by tmad109 •
-
CNV analysis for targeted genomic region
written by Sandeep
-
Analyzing Bisulfite Sequenced Reads
written by sm4bhat •
