Number of genes in a kegg pathway

Hi, how can I know for a kegg pathway how many genes are in? I need to know the percentage of genes that are covered in a pathway with the genes that i found in a transcriptome. Thanks

rna-seq kegg pathway genes

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updated 7.2 years ago by predeus

• written 7.2 years ago by ignazio.fontana •

See this: How do I extract genes from a KEGG pathway
Extracting List Of Genes Associated With A Pathway in a plain file

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written 7.2 years ago by GenoMax

1 answer

You can also use KEGGREST package and pull the pathway into R dataframe. After this, just count the elements.

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written 7.2 years ago by predeus

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