More posts like this
-
How to obtain Node/ Edge information from a Reactome Pathway
written by K.patel5 15Dear Biostars, I am attempting different methods of using Reactome resources from the Bioconductor community to obtain Node/ Edge information. With KEGG this is quite …
-
[gatk 3.6.0] GVCF - haplotypecaller - cross referencing multiple VCF
written by Jalil Sharif 8Hi there, how do you make a GVCF file from bam files, using [gatk 3.6] haplotypecaller if wanting to compare patient with their two parents? …
-
Metdraw tool to compare metabolic paths
written by dnnxl15 0Dear all, I have a question related with this tool. How can i compile metdraw or how to use it in python with kegg database …
-
Request compound name from KEGG Database
written by dnnxl15 0Dear all, i would like to extract the name compound related to the KEGG Database entry, for example if i have C00880, i will have …
-
Convert KEGG KGML files in GPML format
written by dnnxl15 0Dear All, I have a set of some what related KEGG pathways for example glycolysis. Are there any tools available that can merge these pathways …
-
KEGG CONVERTER - KGML to SBML
written by me.sr1510 0hi everyone, I have to make the KEGG pathway downloaded in form of KGML compatible to cell designer for model building. As per my information …
-
Editing and saving KEGG pathway files
written by justp 1I wanted to know if there is a way to take xml files from KEGG and be able to add proteins in a pre-existing group …
-
What Analysis after Denovo Assembly of RNA-seq of a species?
written by Amk 13Dear All, What all analysis we can do after the Denovo assembly for Transcriptome sequencing data of a new species. As the transcriptome data is …
-
Is there any tool to convert blastx format from tabular to xml for feeding it to blast2go?
written by seta 191<p>Dear all,</p> <p>I'm busy with annotating transcriptome assembly by running blastx against some databases, I usually use outfmt 6 and it's not too much time-consuming, …
-
Merging Kegg Pathways
written by Sudeep 168<p>Dear All, I have a set of some what related KEGG pathways (glycolysis and tca cycle for example). Are there any tools available that can …