EIGENSOFT installation issue - Executables and source code: homebrew/science/openblas · Biostar

This is a test version of Biostars. For the public version, visit https://www.biostars.org.

EIGENSOFT installation issue - Executables and source code: homebrew/science/openblas

Hi all!

I am trying to install eigensoft on my MacBook, but facing several issues: In order to use the convertf command, the source code must be used; from the README (https://github.com/DReichLab/EIG) you need to brew install homebrew/science/openblas. This is now deprecated, and I could only find brew tap brewsci/science as substitute. I tried brew install openblas, but it doesn't run.

How would it be possible to install openlabs?

If remake the entire package, the command convertf is not available anymore, and smartpca.pl gives error.

Which is the best way to install EIGENSOFT?

Thank you!

eigensoft smartpca convertf

• 1,839 views • link

updated 7.1 years ago by Biostar

• written 7.2 years ago by mc617 •

0 answers

No answers yet.

Log in to answer this question.

More posts like this

Tutorial: Running DeepVariant natively on macOS Apple Silicon (M1/M2/M3/M4) with Metal GPU accelera…
written 5 months ago by antoniolamb •

Hey Everyone. Just sharing this here in case anyone is doing bioinformatic work on an Apple Silicon Mac and wants to run DeepVariant locally. Google's …
Installing vg on Mac failed due to "Could not find libomp"
written 1.4 years ago by yuxinNing •

Hi, I' trying to install vg on my MacBook, but got errors after installing all dependencies: ``` ... The compiler is Apple Clang that needs …
Can I trust this script I wrote for assembling plant genomes?
written 1.7 years ago by breri •

Hi everyone, I need help with a script I wrote to make genome assembly as easy as possible (also to allow lab mates to use …
STAR error MAC Catalina RNA seq
written 3.7 years ago by sehriban.buyukkilic •

hi everyone, I'm thankful to person who has help me with my previous error in my work. And now ı have a new one, I …
Tutorial: How to get FASTQ reads from the Short Read Archive (SRA)
written 4.8 years ago by Istvan Albert

There are many ways for getting FASTQ data out of the short-read archive. I have spent a few hours today investigating the various approaches. (Edit: …
How to install PLINK on linux/Mac-OS
written 5.7 years ago by giusdalt95 •

Good morning! I am trying to install PLINK in order to run the command "plink". I was following the tutorial at this link (https://willtownes.github.io/blog/2014/12/09/path-tutorial/#:~:text=Go%20to%20the%20plink%20website,just%20double%20click%20on%20it.&text=Now%20close%20the%20terminal%20and,window%20in%20an%20arbitrary%20directory.) but, …
homebrew/science gone, what's an alternative to brew install (___)
written 8.5 years ago by shaban.hiba8 •

I'm new to bioinformatics and to this site so pardon me if this isn't the place for this question (or if it doesn't make sense!) …
Pre-compiled Eigensoft package for Ubuntu?
written 10.4 years ago by dam4l

Hi, I would like to use Eigenstrat on my computer (downloaded from https://github.com/DReichLab/EIG). I have a Mac and have downloaded Virtual Box and installed Ubuntu. …
Forum: James Taylor of Galaxy uses this
written 11.8 years ago by Istvan Albert

Dr. James Taylor is an Associate Professor of Biology and Computer Science at Johns Hopkins University where [he supervises a lab][1] that aims to increase …