Program to align big DNA sequences (100000 bases) and look at conserved regions among them?
Dear Friends,
I have to align 20 DNA sequences of about 100,000 bases each and manually look at a conserved region (tail region; phages) in the alignment to see differences in that region if any. Could you please suggest what tool would be the best for this purpose? As visualization of the region in the alignment is also important. Thanks so much!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Predict the ligand binding site in an Outer Membrane Protein (OMP)?
written by DanielC
-
Downloading conserved untranscribed sequences of multiple species
written by max.rempel2 •
-
Manual curation of annotated genes?
written by DanielC
-
Gaps in sequenced DNA consensus generated from contigs
written by DanielC
-
Genome alignment with good pictorial representation of genome structure (with annotated genes)
written by DanielC
-
How to get a consensus of the contigs obtained from an assembler like spades?
written by DanielC
-
Add new sequence to clustalw2 alignment
written by DanielC
-
Annotating and predicting the genomic region of a sequenced phage
written by DanielC
-
How to predict the sequences of tail proteins of phage lysin within phage genome (fastq format)?
written by DanielC
-
BLAT and Get DNA queries automation
written by guywie •
