MaSuRCA error: can't find 'gatekeeper' program
Hi, im using MaSuRCA assembler and when I try to generate the assemble.sh shell script it says that runCA failed because "can't find 'gatekeeper' program":
/opt/bioinf/MaSuRCA-3.2.2/global-1/CA/bin/runCA config.txt
================================================================================
runCA failed.
----------------------------------------
Stack trace:
at /opt/bioinf/MaSuRCA-3.2.2/global-1/CA/bin/runCA line 1121.
main::caFailure('can\'t find \'gatekeeper\' program in /opt/bioinf/MaSuRCA-3.2...', undef) called at /opt/bioinf/MaSuRCA-3.2.2/global-1/CA/bin/runCA line 795
main::setParameters() called at /opt/bioinf/MaSuRCA-3.2.2/global-1/CA/bin/runCA line 5314
----------------------------------------
Failure message:
can't find 'gatekeeper' program in /opt/bioinf/MaSuRCA-3.2.2/global-1/Linux-amd64/bin. Possibly incomplete installation
Would you help me to get through this error please
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colindaven
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cristamont1995 •
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cristamont1995 •
1 answer
Looks like masurca is now available via bioconda. This might save you some time and trouble if you still have issues.
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Relevant part of the error message (Always read the error message carefully):
Thanks! Actually I did it, but I don't know how to solve it. I already google it and still can't do it. If you have any idea please tell me
You may have to reinstall the package since your current installation may be incomplete.
Can you show us what you get if you do
ls -lh /opt/bioinf/MaSuRCA-3.2.2/global-1/Linux-amd64/bin/gatekeeper?It says "No such file or directory"
It looks like the error message is correct and your install must be incomplete. If this was something you installed then do the install over. If an admin did the install let them know about the error message and ask them to correct.