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Tool: TAMA: long read RNA sequencing (Iso-Seq and Nanopore) processing tools
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TAMA (Transcriptome Annotation by Modular Algorithms) was designed for processing Iso-Seq data and other long read transcriptome data.

The main tools are described in the diagram below:

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The TAMA package starts from a SAM/BAM file of reads mapped to a reference genome.

Please see the TAMA github wiki for details and instructions: https://github.com/GenomeRIK/tama/wiki

The code can be cloned and run without installation as long as you have access to Python 2.7.

https://github.com/GenomeRIK/tama

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