SGT and Genotype in strelka output
Hi All,
I try to use strelka for the first time to call somatic mutation for cancer samples. I meet two problems and hope to receive some help:
- I find
SGT=GG->GGandSGT=ref->hetin INFO column, how to understand them? FORMATcolumn don't have genotype, How to obtaingenotypesfor my samples?
Thanks.
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Shicheng Guo
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