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Question: Assembler for only nanopore data
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Hi Everyone! Does anyone know about an assembler where the input is ONLY nanopore data (i.e, no Illumina or any other kind of short reads)? What about using ABySS for assembling only nanopore reads, is it OK? (I know that SPAdes should not be used if I have only nanopore reads)

Thanks a lot!

ADD COMMENTlink 10 months ago ringourquia • 10 • updated 10 months ago harish • 200
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Have a look here you will probably find what you want.

ADD REPLYlink 10 months ago
Juke-34
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I believe Canu is a popular option. Should work for either nanopore or PacBio long read data.

ADD COMMENTlink 10 months ago Dave Carlson • 70
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Thanks a lot Dave! I will check it out

ADD REPLYlink 10 months ago
ringourquia
• 10
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You can try Canu, Flye, Necat, Minimap-miniasm, Ra etc.

ADD COMMENTlink 10 months ago harish • 200

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