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Assembler for only nanopore data
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20 months ago
ringourquia • 10

Hi Everyone! Does anyone know about an assembler where the input is ONLY nanopore data (i.e, no Illumina or any other kind of short reads)? What about using ABySS for assembling only nanopore reads, is it OK? (I know that SPAdes should not be used if I have only nanopore reads)

Thanks a lot!

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Have a look here you will probably find what you want.

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17 months ago
Dave Carlson • 70
Stony Brook University, NY

I believe Canu is a popular option. Should work for either nanopore or PacBio long read data.

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Thanks a lot Dave! I will check it out

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21 months ago
harish • 200

You can try Canu, Flye, Necat, Minimap-miniasm, Ra etc.

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