How to Simulate RNA-Seq data with allelic bias
Hello everyone,
I am trying to simulate RNA-Seq reads to test some software. I want some of the genes to exhibit allele-specific expression, meaning to have one gene allele expressed more than the other. Is there a software that does such simulations?
Thanks,
PD. Also, if anyone knows of any software that also simulates RNA editing sites it would be great.
• 1,381 views
•
link
written
by
Giovanni Quinones Valdez •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
ChIP-Seq Analysis allele specific way?
written by Susmita Mandal
-
RNA-seq illumina paired-end data simulation with fold change differences
written by k.kathirvel93
-
Allele specific expression and adenosine to inosine gene editing
written by eamonnmallon5 •
-
Don't know how to analysis the downloaded data from ENCODE project, including tsv file about gene q…
written by ghostforever.shi •
-
ChIp-seq RNA-seq overlap
written by Federico •
-
How to findout RNA seq data of normal Human ovarian epithelial tissue?
written by jiffyjohn23 •
-
filter out low expressed RNA-seq genes using anova
written by jfertaj
-
Extracting gene subnetwork from pathways using gene expression data
written by Nicolas Rosewick
-
Getting Transcipt Variants For Specific Genes In Rna-Seq Data
written by Rubal7
-
Simulation Negative Selection
written by Rubal7
If you're familiar with R this could be of value: http://www.bioconductor.org/packages/release/bioc/html/polyester.html