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Converting between CNV Algorithm results (PICNIC v GISTIC)
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14 months ago


I am working with a tool that uses CNV as part of its analysis and was built originally around TCGA data, so its calculations are based on the Birdsuite/GISTIC pipeline. I want to use a dataset from another group, but they used PICNIC to calculate their CNV values and I am running into issues because the outputs are on a different scale. I'm wondering if anyone has run into this before and knows of a way (or a package) to convert between the two without having to get the raw files and run them through Birdsuite/GISTIC from scratch.



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