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RepeatModeler nseg installation problem

Hi,

I am trying to install nseg in my computer so I can use RepeatModeler but this is not working. I have a folder called nseg in my computer with 7 files in it: genwin.c genwin.h lnfac.h makefile nmerge.c nseg.c runnseg When I typed make the result is:

....... 36 warnings and 11 errors generated

Any idea how to solve this ? Thanks

repeatmodeler nseg installation
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updated by dmathog • dmathog • written by Amaranta_Remedios • Amaranta_Remedios

I also have the same problem - so frustrating as so little online documentation. Any luck getting this issue sorted?

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written by 96clbutler • 96clbutler

I can compile nseg on a Debian Linux with GCC version 8.3.0 - there are lots of warnings, but no errors.

Please tell which is your operating system and the compiler and its version. More important, use pastebin or some other similar forum to post the error messages and post the link here.

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written by h.mon h.mon

I'm facing the same error have you figured this out?

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written by bioinfo • bioinfo

1 answer

This one has been modified to build without warnings using gcc 8.3.1:

https://saf.bio.caltech.edu/pub/software/molbio/nseg_modified.tar.gz

Note that "without warnings" means with no C standard specified.
Adding "-std=c99" or "-std=gnu99" breaks it, but it will still compile cleanly with "-std=c89".

Use at your own peril!

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written by dmathog • dmathog

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