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Bam file @RG read group information LB (The library from which the read has been sequenced)

Hello everyone,

I have 120 bam files. I want to run Breakdancer-max.

Bam file currently have below read group information

@RG ID:sample105_sg1_humansingle1_l1    SM:sample105_sg1_humansingle1   PL:ILLUMINA

To run Breakdancer LB (library) information is needed?

I don't have much idea about the sequencing of these samples

Is there any way, I can get library information from bam file itself?

alignment sequencing
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written by Sudhir Jadhao Sudhir Jadhao

1 answer

how I can get the library information for each bams file

Best is to ask the wetlab team who performed the experiment.

and this is the answer to how you can add LB - picard's AddOrReplaceReadGroups tool

java -jar AddOrReplaceReadGroups.jar
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written by lakhujanivijay lakhujanivijay

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