DNA-Methylation downstream analysis using deepTOOLS or bedops
Hi!
Is it possible to plot DNA-methylation (bigwig file) around various genomic regions (promoter, gene-body, 5' and 3' UTRs) of Arabidopsis using any tool such as deepTools or BEDOPS or anyother? If yes, how, which file of genomic regions should I take, and in what format? I'll appreciate any help?
Thank you! Best
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Rashedul Islam
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sc@791 •
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sc@791 •
1 answer
Yes, it is possible. Please look at the example codes here: https://deeptools.readthedocs.io/en/develop/content/tools/plotProfile.html
You can provide bed files for genomic regions.
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