to check allelic biases in histone peaks
I have called QTLs on histone peaks if I want to see if hQTLs that are located inside the histone peaks exhibits allelic biases or not? How do I do it?
What I have done is as following:
1) I took peaks for which hQTLs-snps is inside the peak 2) for hQTL-snps, peaks combination, I found set of individuals which are het for those sites 3) I then plot histone peaks raw counts for those peaks and individuals. if the distribution is normally distributed then there is no bias as oppose if it shifted.
Am i right?
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