Biostar Beta. Not for public use.
How to get RNA-Seq raw counts of primary tumor samples from TCGA patients with a certain gene mutated?
0
Entering edit mode
23 months ago
dagsbio • 20
@dagsbio46321

Dear all,

I am struggling to find an easy way to get RNA-Seq raw counts of primary tumor samples from TCGA patients with a certain gene mutated.

I have tried few R scripts posted in biostars but I haven't figured out the way to adress this question, besides when trying to go through https://portal.gdc.cancer.gov/ I always end up downloading blood derived normals too that then I need to filter out one by one as I haven't found a "bioinformatic" way to do it yet...any suggestions?

Thank you!

tcga data rnaseq expression • 141 views
ADD COMMENTlink
0
Entering edit mode
23 months ago
dagsbio • 20
@dagsbio46321

Just found an easy way to get rid of non-tumor samples here: TCGA BRCA Solid Tissue Normal Filter

ADD COMMENTlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.3