faSize caused expandFaFastBuf

Hi, I have a 2.6gb assembly file (lab-qld.fasta) I got expandFaFastBuf which running faSize programm

> faSize -detailed /lustre/scratch/lab-qld.fasta >lab-qld.fasta.sizes
expandFaFastBuf: integer overflow when trying to increase buffer size from 2147483648 to a min of 61.

What did I miss?

Thank you in advance,

assembly sequencing software error

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written 7.3 years ago by Ric

Please provide some context and additional information. Where did you get faSize from (Jim Kent's UCSC utils)? What are you trying to do?

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written 7.3 years ago by GenoMax

Accedently, all contigs have been merged into one contig which caused the error. This was not intended.

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written 7.3 years ago by Ric

0 answers

No answers yet.

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