FASTA-format file using terminal command line
using two files which are a subset of paired-end reads from a eukaryotic transcriptome (read length 90, insert size 200 I am trying to create a FASTA-format file containing all assembled transcripts 300 bp or larger. Each FASTA record should include a unique gene id (any alphanumeric identifier, e.g. gene 1234).
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Ok. But what's your question and what does your data look like?
Since you have not clarified this I will ask.
Now this is sounding like an assignment based on the edits you made. If it is you should clearly state that. At this point you have a starting point with
trinity. You now will need to show some effort on your part to get further assistance.