Hi, I was wondering if a post-docking adjustment of my Protein-Ligand (RNA) Model is validated: I performed a docking simulation with Autodock Vina v. 1.2.0, …
I am performing molecular docking experiments but find that the results are "pre-determined" by the setting used. Therefore, I am looking for a general guideline …
Hi, I am looking for software for protein-ligand docking. I am aware of AutoDock, VINA, HADDOCK. Which one do you suggest for virtual screening? (any …
Hi, I have generated docking poses using chimera and autodock vina. I have a separate different type glucosinolate molecule which I want to superimpose on …
Is it possible to perform RNA-ligand docking using Autodock Vina? Can "prepare_receptor4.py" be used to prepare RNA receptors? (I mean, "really" used, like "with reliable …
<p>Hi,</p> <p>I have some doubts on Docking. I have modeled out a structure from homology modeling and perform some refinement. Now, there are two substrates …
<p>Dear all,</p> <p>Am using autodock 4.2, after docking my compound structures looks different in complex (protein -ligand). I want to know why my compounds looks …