[ensemblVEP][1] had a great function called [parseCSQToGRanges][2] that you could use to get the consequence information in a nice data.frame, e.g. vcf <- readVcf(tempFile, genome="grc38") …

Hello Everyone, I just need to make sure that we can use GWENA R/Bioconductor package (https://www.bioconductor.org/packages/release/bioc/html/GWENA.html) in proteomics. although WGCNA is designed for microarrays and …

Hi all, I have a problem with the different version of R-RStudio and RipSeeker package. I'm working with R 4.1.2, RStudio 2021.09.1 Build 372, Bioconductor …

# NB - please post questions on Bioconductor Support: https://support.bioconductor.org/ [ direct link to create a post: https://support.bioconductor.org/p/new/post/?tag_val=PCAtools ] ------------- # PCAtools [![ex9-1][1]][2] [![ex11b-1][3]][4] [![ex5-1][5]][6] …

Bioconductor 3.8 will be released on Wednesday, 31st October 2018. Any new packages to be included in the release will have to be submitted by …

# NB - please post questions on Bioconductor Support: https://support.bioconductor.org/ [ direct link to create a post: https://support.bioconductor.org/p/new/post/?tag_val=EnhancedVolcano ] ---------- # EnhancedVolcano [![Ecv9vi-XX0-AE4q3-A][1]][2] [![download-1][3]][4] [![ex7-1][5]][6] …

This is a little survey question meant to result in a list of client software to access TCGA data from R, python, or any other …

Hey Guys I have raw data(idat files) from Illumina Omni5 genotyping platform. My main interest is to find the Copy Number Variation in these samples. …

<p>I'm new to bioinformatics and R.</p> <p>I have trouble in installing Bioconductor on CentOS6.4.</p> <p>R version :</p> <blockquote> <p>R version 3.0.1 (2013-05-16) -- "Good Sport" …

<p>I have been exploring the R ontoCAT package from Bioconductor (http://www.bioconductor.org/packages/release/bioc/html/ontoCAT.html), but I noticed that there is no method for getting all of the instances …