Variant allele frequency
1 answer
Once you have your variant file you can filter variants based on allele frequency:
https://vcftools.github.io/man_latest.html#BASIC%20OPTIONS
See the section on allele filtering. Hope this helps.
Log in to answer this question.
More posts like this
-
GWAS with SAIGE - how to proceed
written by a_confused_biologist •
-
Data Visualization tool for mutations difference between primary and metastatic tumor.
written by moustafa_abohawya •
-
How to understand the mutant allele frequency
written by 18982289189 •
-
Mutect v1 doesnt finds second alternative allele
written by guffrann •
-
Infer somatic mutations without normal control
written by CY
-
Qustions about Somatic Variant Caller
written by Phoe •
-
Allele frequency of a gene from a .bam file.
written by Kasthuri
-
The problem with sensitivity analysis of somatic variant caller
written by phongphak.06 •
-
How does the idea of fiddling with normal and tumor coverage reads work to compare VarScan and Mute…
written by ivivek_ngs
-
Question about homozygous concept in a paper sentence
written by mangfu100
