Which automatic metagenome binning tools can handle viral bins?
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5.1 years ago
O.rka ▴ 710

I've been using VizBin for all of my binning which takes a good amount of manual curation. I've recently found out about metawrap which uses metabat2, maxbin2, and concoct w/ some dereplication. MaxBin2 uses marker genes so it drops viral bins. Are there any tools that exclusively use sequence and coverage information to do the binning (not checkm markers)?

assembly metagenomics binning • 1.3k views
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