Hi All, I have a list of 4000 genes (Transcript IDs/HUGO symbols) which I want to annotate with the following canonical information: 1 1190583 1190867 …
Hi there, I've used VEP (GRCh38.90) with the option --canonical to annotate my variants from WES and want to focus on canonical transcripts. This gives …
Hi, I have a SAM alignment file. Alignment was done using BWA MEM between reference genome (in scaffolds, not a finished genome) and assembled transcripts …
Hi there, I would like to map UCSC transcripts id (mouse genome mm10, I downloaded the transcripts id from [http://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/refMrna.fa.gz][1]) to gene symbol. I have …
I intersected exon coordinates with coordinates of mutations and I get the bed file with exons that contain mutations. This can be done with bedtools. …
Hi, I'm trying to retrieve "UTR" sequence (i.e. 5'UTR sequence) from "Exon" of "Canonical Transcript" using a list of gene symbols. First I tried Ensembl …