ChIP Seq out file description along with correlation between RNA and ChIp seq
0
0
Entering edit mode
5.1 years ago

Dear All,

I have used MACS2 for peak calling ,and i have 6 outfiles. They are: 2 files with .bdg extension, .r , .narrowPeak , .xls, .bed file

what does abs_summit and pileup column in .xls file indicate and what does 5th column in the .bed file mean(if its pileup, what is the difference between 2 pileup values)?

Further How do I co relate RNA seq deferentially expressed genes with Chip seq data.

Looking forward to hear from you,

Thank you,

ChIP-Seq RNA-Seq • 824 views
ADD COMMENT

Login before adding your answer.

Traffic: 1503 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6