Entering edit mode
5.2 years ago
zizigolu
★
4.3k
Hi
I am not able to solve this error, any help please?
File "/home/fi1d18/.conda/envs/py3venv/lib/python3.6/concurrent/futures/_base.py", line 384, in __get_result
raise self._exception
RuntimeError: Could not find the executable 'Rscript' -- is it installed correctly?
(Original error: [Errno 2] No such file or directory: 'Rscript': 'Rscript')
make: *** [build/p2-5_5.cns] Error 1
(py3venv) [fi1d18@cyan02 test]$
I only know that my R is in this path
/local/software/R/3.5.1/bin/R
Also I have already installed DNAcopy r package
Thank you for any help
https://github.com/etal/cnvkit/issues/111#issuecomment-221677565
Thanks a lot, I already installed that in
And inside that I have
Looks like you installed R in your own space. Did
Rscript
not get installed when you did that?Sorry I only know
library(DNAcopy)
is available I am not sure how I can check the installation or location ofRscript
:(Rscript
is part ofR
install. Nothing to do withcnvkit
.Do you have
R
available on the system side (not one in your own directory)? PerhapsRscript
is available there.Sorry
So use this R then.
How? I don't know how to tell software that this is my R
When you do
which Rscript
orwhich R
what do you see?Remove
/local/software/R/3.5.1/bin/
from your$PATH
, if present.Thanks a lot
Exactly by
Likely software installed
Thank you for helping me
Very appreciated
Sorry, I was trying to install R package but I am getting this error
How I can change directory to where I have more space like scratch/fi1d18 ?
Please:
Installation error CNVkit: could not find the executable 'Rscript'
.CNVkit
would definitely make sense here,software error
is useless.