"Manual" enrichment analysis of gene set for genes associated with cell types
Using WGCNA, I have a set of gene modules; these modules have correlations associated with a treatment.
I want to test whether certain modules can be characterized as representing a certain cell-type (e.g. astrocytes) by using established cell-type marker genes.
I'm not quite sure how to go about this. If anyone could point me in the right direction as to how to enact this workflow, I would be very grateful!
Thanks in advance.
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rebeliscu •
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