Filtering Genes / Batch Correction
One paper was mentioning removing genes with residual batch effects. What does that mean?
Is it something removing genes higher than 0.05 q values after batch correction?
pValuesComBat = f.pvalue(combat_data,mod,mod0)
qValuesComBat = p.adjust(pValuesComBat,method="BH")
combat_data = combat_data[qValuesComBat<0.05,]
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