MyCC not producing any output files
Hello All
I am unable to get any output files after running MyCC.
MyCC.py mg_scaffold.fa
Only the log file exists nothing else. Could you please help?
Thanks
Suran
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As per here: C: MyCC not producing any bins
Did you look through the log file? What does that log file state? Look for warning and/or error messages.
suran.nambisan, please reply to Kevin Blighe 's comment in the original question.
Hello suran.nambisan!
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