Chip seq (ac) reads count per pick
Hi guys I have to analyze chip seq acetylation data. I'm a newbie in the field. I followed the typical pipeline proposed in many tutorials, i.e. starting from the alignment until the Macs peak calling. Now I have .merged.bed files that contain the merged picks (this was done using mergeBed). Now my question is how to obtain the count of reads on the merged picks in order to use that matrix as input of edgeR?
Thank you in advance
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Pierre Lindenbaum
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Bnf83
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