SNP-gene matrix construction

What is the easiest way to build an SNP-gene matrix, with rows corresponding to SNPs and columns corresponding to genes regulated by the SNP? Any insight would be much appreciated.

snp gene r

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written 7.5 years ago by bioinfo456

R ? https://cran.r-project.org/web/packages/seqminer/index.html

Python ?

C: parsing vcf file

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written 7.5 years ago by Bastien Hervé

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