TCGA RNAseq Data is normalized against which Genome version · Biostar

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TCGA RNAseq Data is normalized against which Genome version

Hi everyone I just have a simple question. I have downloaded the TCGA RNAseq data for PAAD, I have done with differential gene expression analysis. Now i required the gene coordinate for the differential expressed genes. now my question is against which Human genome version it is harmonized/mapped. Is it hg38 or hg19. How to get gene coordinate from gene name only.

Thanks in advance

rna-seq assembly

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updated 7.5 years ago by GenoMax

• written 7.5 years ago by rajesh

1 answer

You could have found this information by an easy search. It is GRCh38, if you downloaded the data directly from TCGA-GDC.

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written 7.5 years ago by GenoMax

Yeah, I have downloaded the RNAseq data from GDC-TCGA portal.

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written 7.5 years ago by rajesh

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work.

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written 7.5 years ago by Ram

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