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Question: Visualize BEDPE file
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Hi All,

I have a bedpe file resulting from an HiC experiment. the structure is like this: Chr_bait \t Start_bait \t End_bait \t Chr_target \t Start_target \t End_target \t Notes \t Stat_value

Currently I am visualising them on IGV and they looks likes arches that link the 2 regions (Bait to Target). Do you know if there is a way to set the thickness of the arches proportional to the stats value? Or are there any other tools that allows to do it?

Thanks!

ADD COMMENTlink 13 months ago ste.lu • 40
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Or are there any other tools that allows to do it?

circos ?

ADD REPLYlink 13 months ago
Pierre Lindenbaum
120k
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I was trying to use Rcircos and BioCircos, But I think I can't zoom in as much as I want, in terms of chromosomal region. Is it different for Circos?

ADD REPLYlink 13 months ago
ste.lu
• 40

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