How can view haplotype from GnomAD

Hi,

Is there a place to view haplotype from gnomAD ? For instance, I would like to show all variants linked to a specific variant .

haplotype haploview gnomad

• 1,576 views • link

written 7.6 years ago by sacha

0 answers

No answers yet.

More posts like this

How to extract and analyze variant sequences from gnomAD v4 exome VCF
written 1.6 years ago by Rohan •

I am working on a pharmacogenomics study focusing on the GPCR gene family and analyzing variant sequences in ~700,000 individuals from the [gnomAD v4 exome …
What is chrom and position values in Wuhan-Hu-1 genome data
written 4.0 years ago by Nemo •

Hi, I have variants from covid samples using gatk and haplotype caller. In the resulted table, for each sample and variant there is two columns …
GnomAD subset vcf files
written 4.2 years ago by kanika.151

Hello All, Do you know how to extract variants related to a specific population from the GnomAD exome vcf file? In ExAC, one can find …
gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
written 5.3 years ago by jon.klonowski

Hello, I was looking at VEP annotated gnomad AF (gnomad V2, exomic, since I am analyzing exomes) and noticed that there was a class that …
Does GNOMAD use all LOFTEE LoF filters?
written 6.5 years ago by brismiller •

Hi all, I have some lof variants and I want to know if they have already been detected in GNOMAD (I am essentially curious if …
gnomAD: query utilitites
written 7.3 years ago by bsmith030465

Hi, I wanted to query the gnomAD database without having to download and configure the entire data. Is there a way gnomAD provides an API …
Extract allele count from gnomAD using R
written 7.4 years ago by Nicolas Rosewick

Hi, Is there a way to extract the allele count for each population of a specific variant using R (oar maybe through a REST API …
Forum: Create a File format to store Variant
written 8.1 years ago by sacha

Hi, BED format or VCF format are not well designed to store [hgvs][1] notation and metadatas of a variant. I would like to have a …
remove a percent of reads from a BAM file
written 10.0 years ago by sacha

I would like to remove x% of reads from a BAM file at a specific region . For instance : remove 50% of reads in …
bcftools extract data
written 11.4 years ago by sacha

Without awk, only with bcftools, is there a way to view selected data from a vcf file? For example, show only Depth value, something like: …