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bcftools extract data
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13 months ago
sacha ♦ 1.7k
France

Without awk, only with bcftools, is there a way to view selected data from a vcf file ?

For exemple , show only Depth value , something like :

bcftools view a.vcf -select=DP 
bcftools extract • 1.3k views
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Entering edit mode
13 months ago
sacha ♦ 1.7k
France

Sorry, I just found the answer :

bcftools query
Extracts fields from VCF/BCF file and prints them in user-defined format

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