How to run Bracken on windows?
Hi,
I have been tasked with calculating the relative abundance of bacterial reads in a samples containing 2 different bacteria genomes. My supervisor has suggested using Bracken but I cannot seem to download it on to my windows computer?
The manual says to use sh install_bracken.sh to install but as its windows it wouldn't work. How do I install it?
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nattzy94 •
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You could either install Linux bash shell on Windows or use tools like Cygwin to run this program on Windows.