Entering edit mode
5.3 years ago
nattzy94
▴
50
Hi,
I have been tasked with calculating the relative abundance of bacterial reads in a samples containing 2 different bacteria genomes. My supervisor has suggested using Bracken but I cannot seem to download it on to my windows computer?
The manual says to use sh install_bracken.sh to install but as its windows it wouldn't work. How do I install it?
You could either install Linux bash shell on Windows or use tools like Cygwin to run this program on Windows.