vcf to venn diagram
0
Hi,
I tried to reproduce this article but this command failed:
$ bcftools isec -n +2 calls-16c-gt-q20.vcf calls-SA-gt-q20.vcf > isec_file1-v-2_out.vcf
[main] Unrecognized command.
I am using samtools 1.9.
What did I miss?
Thank you in advance,
snp
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5.3 years ago by
Ric
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430
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Can you try running
which bcftools
followed by justbcftools
and paste both outputs here? This might be a version mismatch.Also, just to eliminate a possibility, you're not typing the
$
as part of the command, right?