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Linda
Linda
Reputation:
80
Joined:
5.4 years ago
Last seen:
5.0 years ago
Location:
Ireland
Latest posts by user
0 votes
2 replies
1.6K views
Extremely low number of variants in VCF file after filtering MIN(FORMAT/DP)>10
bcftools snp vcf calling
updated by cpad0112 cpad0112 • written by Linda • Linda
1 vote
0 replies
0 views
Comment: Comment: Bcftools how to add DP to FORMAT field (get per sample read depth for REF vs AL
written by Linda • Linda
1 vote
2 replies
0 views
Comment: Comment: Bcftools how to add DP to FORMAT field (get per sample read depth for REF vs AL
written by Linda • Linda
1 vote
0 replies
0 views
Comment: Comment: Bcftools how to add DP to FORMAT field (get per sample read depth for REF vs AL
written by Linda • Linda
4 votes
8 replies
9.0K views
Bcftools how to add DP to FORMAT field (get per sample read depth for REF vs ALT alleles )
bcftools snp vcf calling
updated by Michal Nevo • Michal Nevo • written by Linda • Linda
0 votes
0 replies
0 views
Comment: Comment: VCF file - If format is GT:PL what does 1:161, 0 mean for GT column
written by Linda • Linda
0 votes
2 replies
1.4K views
VCF file - If format is GT:PL what does 1:161, 0 mean for GT column
bcftools vcf
written by Linda • Linda
0 votes
1 reply
0 views
Comment: Comment: Bcftools isec output only contains one sample name - how to identify which sampl
written by Linda • Linda
0 votes
3 replies
2.7K views
Bcftools isec output only contains one sample name - how to identify which samples share the same variants
bcftools vcf isec
updated by Kevin Blighe Kevin Blighe • written by Linda • Linda
1 vote
1 reply
0 views
Comment: Comment: Modify chromosome column in bam file using pysam fetch
written by Linda • Linda
0 votes
0 replies
0 views
Comment: Comment: Modify chromosome column in bam file using pysam fetch
written by Linda • Linda
0 votes
6 replies
3.4K views
Modify chromosome column in bam file using pysam fetch
pysam
updated by David Parry • David Parry • written by Linda • Linda
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