RNA-seq DE genes visualization in genome browser · Biostar

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RNA-seq DE genes visualization in genome browser

Hello,

I'm trying to summarize a bunch of information from RNA-seq and ChIP-seq analysis on the same reference in a genome browser (I'm currently using JBrowse).

What would be the best way to represent the information about differentially expressed genes in a track ? The minimum information I would need to represent would be the gene name, Fold change and pvalue. Having the fold change displayed in a visible way would be the goal. I already have a GFF track for the reference as well as a lot of BigWig and BED tracks from my analysis.

Thanks in advance for any idea

rna-seq rna-seq

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written 7.6 years ago by pierre.pericard •

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