Input file LD in Haploview
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5.4 years ago

Hi, I have a list of SNP which I can load into tassel but in order to load that same file to Haploview what format should it be? Already tried changing the numbers -1, 1, 2, 3, 4 for each base saved as .hmp (txt) and then try to open it as a HapMap and I always get an error that something is wrong with one of the genotype (which is not the case). Any ideas?

Thanks:)

LD Haploview Tassel next-gen SNP • 1.5k views
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