How to perform statistical analysis of label free experiment using results from Proteome Discoverer?
Hello,
I would like to know tools to perform ANOVA like statistical test for multiple group comparison based on results from Proteome Discoverer (PD) for label free experiment (version 2.2)
Secondly I would also like to know whether log2 normalized raw abundances generated by PD is preferable to perform statistical analysis or generate LFQ algorithm values to perform statistical analysis.
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Hello, i'm dealing with the same question. How did you manage your data at the end? I was thinking that I don't need to do any extra processing of the results, since Minora already offers direct quantification and from this I plan to select the differential proteins. What could you suggest?
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