Extracting sequence names from phylogenetic tree (in newick format or MEGA)?
I would like to extract the sequence names of a certain node of a phylogenetic tree built in MEGA.
Since there are quite a lot of sequence of the node (up to thousand), is there a method to extract the sequence names by specifying a node either using the newick format or MEGA?
Thanks!
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It won't be super simple, but you can access nodes and their descendents in the object model of
ETE3andDendropy. You would need to know the node ID ahead of time though I think.