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How to remove the nucleotide sequences that correspond to Illumina adapters?

How to remove the nucleotide sequence that correspond to adapters without removing the whole read?

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read filtering adapter sequencing
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updated by ATpoint ATpoint • written by rimgubaev rimgubaev

what have you tried (searched for) already, since this a very basic question.

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written by lieven.sterck lieven.sterck

voila, this one for example :-)

though I prefer BBmap suite for this (trimmomatic has been reported to have some issues)

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written by lieven.sterck lieven.sterck

The term you are looking for is "trimming". By searching for that you'll find plenty of tools :)

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written by WouterDeCoster WouterDeCoster

simply googling the exact phrase OP posted here already provided lots of tools ;)

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written by lieven.sterck lieven.sterck

Hello rimgubaev!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

On the right of the page, you find a section "Similar posts"; and Biostars also has a search function. Keyword is "adapter trimming".

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written by ATpoint ATpoint

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