More posts like this
-
Interpretation of PCA plot
written by Lorenzo •Hi to all, I obtain this plot after vst method of DESeq2. <a href="https://ibb.co/mc6DfR2"><img src="https://i.ibb.co/1m8vF0P/PCA-plot.png" alt="PCA-plot" border="0"></a> Should I proceed with batch effect correction or …
-
any idea about histogram(graphic) clustering?
written by boatyhi guys, I generated more than 10000 transcript coverage histogram and i want to separate them into 2 different categories . group 1, there is …
-
How to extract mitogenomes from these fasta files? HELP
written by Andrea.Neobahamut •Hello, please someone help me to solve this: I have many contigs on fasta format, already ran a BLAST to them against the own database …
-
Flagstat output for bowtie2 alignment
written by anjuraas •this is my flagstat output for bowtie 2 alignment. is it normal? <img src="https://i.imgur.com/j2ZxhDt.jpg" alt="">
-
While generating the % of mapped reads to all miRNAs, do I need to consider unique or multi-match r…
written by bioinforesearchquestionsHi folks, I am trying to create a table for the distribution of mapped RNA sequenced reads across miRBase v.21 for each isomiRs. <a href="http://www.freeimagehosting.net/commercial-photography/"><img …
-
Strange MA plot from DESeq2
written by Yuyayuya •Hello guys, I got a strange MA plot like this. <a href="https://imgur.com/jcjWNwr"><img src="https://i.imgur.com/jcjWNwr.png" title="source: imgur.com" /></a> The code I used was simply like the manual: …
-
What's wrong with this sample? (kmers found by FastQC of RNA-Seq)
written by NickI've run FastQC on a sample of Illumina RNA-Seq. It identifies issues with abnormal kmer counts: <img alt="kmers" src="http://i.imgur.com/4OTeVFs.png" style="height:600px; width:800px" /> There is the …
-
Combat normalization returns negative values
written by lahat.albert •I am trying to correct batch effect using combat. About 40% of my genes ends up having at least one negative result. If just drop …
-
News: MinION Community Meeting: Thursday Dec 3rd (now live)
written by Istvan AlbertThe **MinION Community Event** is now underway at the New York Genome Center https://mcm.nanoporetech.com/ehome/index.php?eventid=143592& Start of the conference <img alt="" src="http://i.imgur.com/f731a0K.jpg?1" style="height:600px; width:800px" /> The …
-
Enrichment of ChiP over input comparison
written by marina-orlovaHello Could you please advise how can I compare data about ChiP enrichment (I need to count correlation) There are 4 "types" of signal files: …

Looks like a cheap plastic toy from the 1980s. Please provide some context. Where have you seen this, previously?
Haha I agree, it's not the most good looking one, but it was the only example I found in google.
I saw this one from Alberts' Molecular Biology of the Cell book. I attached the figure I am referring to. In general, I am more interested in this mountains-and-hills visualization of the frequency of discrete data accross the genome.
Please use
ADD COMMENTorADD REPLYto answer to previous reactions, as such this thread remains logically structured and easy to follow. I have now moved your reaction but as you can see it's not optimal. Adding an answer should only be used for providing a solution to the question asked.It related to Figure 3 from this work from 2007: The Genomic Landscapes of Human Breast and Colorectal Cancers. I checked quickly and could not see anywhere where the authors explained how they generated the figure. Supplementary is HERE.
I mean, it looks like it could have been generated in Matlab, VB, or plotly
Please provide example data, it should be possible to make 2D scatter plot, and replace "mountains" either with overlapping points with alpha or with size of points based on number of hits on that position.