Biostar Beta. Not for public use.
Understanding significance of enrichR results
1
Entering edit mode
2.3 years ago
@kathryn.eckartt50692

I have a set of differential expressed genes from RNAseq that I'm running basic enrichment analysis on using enrichR.

How is one meant to interpret the combined score value in the resulting data frame? Should this be used to determine significance instead of the adjusted P value?

I thought it might be so given Figure 2 in the original enrichR paper (Chen et al, 2013) but I haven't taken a statistics course yet despite being a first year in a biomedical PhD program. Thank you for all of your help

enrichR statistics significance RNA-Seq • 486 views
ADD COMMENTlink
1
Entering edit mode
2.3 years ago
@Charles Warden8047

I haven't tested the Bioconductor version, but perhaps this message thread can be useful?

A: the best combine score for enrichment analysis from Enrichr

In terms of Enrichr interpretation, I usually check the first few categories ranked to show in the web-interface. However, I admittedly can't say for certain whether this is the "best" option. For IPA, sorting by either p-value or z-score can be helpful for different projects, so my guess is that use of the scores for Enrichr may be similar (meaning sometimes it is good to use the provided ranking, sometimes it is good to sort other ways).

ADD COMMENTlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.3