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dN/dS ratio from .vcf file

Hi

I have 6 .vcf files corresponding to 6 samples.

I would like to find dN/dS ratio using these .vcf files but most approaches to this (whatever I could find) were MSA based.

Anyone can provide me a way to get this out of my .vcf file.

synonmous non-synomous mutation
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updated by rohitsatyam102 rohitsatyam102 • written by shubhra.bhattacharya shubhra.bhattacharya

Hi The SNPgenie doesn't work these days. It keeps on giving segmentation fault. Can you suggest another tool?

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written by rohitsatyam102 rohitsatyam102

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