dN/dS ratio from .vcf file

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5.4 years ago

shubhra.bhattacharya ▴ 140

Hi

I have 6 .vcf files corresponding to 6 samples.

I would like to find dN/dS ratio using these .vcf files but most approaches to this (whatever I could find) were MSA based.

Anyone can provide me a way to get this out of my .vcf file.

synonmous non-synomous mutation • 3.5k views

ADD COMMENT • link updated 6 months ago by rohitsatyam102 ▴ 840 • written 5.4 years ago by shubhra.bhattacharya ▴ 140

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You might try SNPgenie

ADD REPLY • link 5.4 years ago by Fabio Marroni ★ 3.0k

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Hi The SNPgenie doesn't work these days. It keeps on giving segmentation fault. Can you suggest another tool?

ADD REPLY • link 6 months ago by rohitsatyam102 ▴ 840

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